Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs75867569 chr5:127717273 A/C 3.53E-6 174 25.92 22.63 15.73 KM Plot
PCPG rs7587280 chr2:61561648 G/A 0.000452 178 24.1 30.93 17.85 KM Plot
PCPG rs75880756 chr7:105163821 G/C 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs75903717 chr7:33715304 A/G 1.24E-7 175 25.53 25.43 19.87 KM Plot
PCPG rs75905172 chr7:33711879 G/A 1.24E-7 176 25.4 25.43 19.87 KM Plot
PCPG rs75906855 chr2:242551845 T/A 4.95E-5 175 25.87 28.42 20.2 KM Plot
PCPG rs7592020 chr2:24345562 C/G 0.00011 178 25.28 26.92 17.43 KM Plot
PCPG rs7593942 chr2:242535751 G/A 4.16E-5 177 25.87 27.27 20.2 KM Plot
PCPG rs75947067 chr13:27134359 A/T 0.000143 177 25.77 24.37 13.17 KM Plot
PCPG rs7594750 chr2:242525778 G/A 4.73E-5 176 25.87 29.95 19.75 KM Plot
PCPG rs7594975 chr2:6747344 C/T 2.53E-5 177 25.87 24.52 23.6 KM Plot
PCPG rs7595268 chr2:107245977 C/T 0.000239 176 26.57 23.53 25.87 KM Plot
PCPG rs7596933 chr2:241527462 G/T 3.68E-5 177 25.97 20.2 10.3 KM Plot
PCPG rs7599891 chr2:242554912 C/T 4.04E-5 178 25.87 26.47 20.2 KM Plot
PCPG rs7603220 chr2:24309700 A/G 0.00011 178 25.28 26.92 17.43 KM Plot